Publications

Ampicillin/sulbactam in combination with ceftazidime/avibactam against metallo-β-lactamase-producing carbapenem-resistant Acinetobacter baumannii: a genomics-informed mechanism-based model

Bhavatharini Arun, Eloise Liu, Quentin Vallé, Rajnikant Sharma, Ngoc Minh Bui, Vyanka Mezcord, Irene Luu, German M. Traglia, Fernando Pasteran, David Paterson, et al.

The Journal of Infectious Diseases, 233(2), e521–e533

Vitamin B12 promotes cefiderocol resistance and small-colony variants in carbapenem-resistant Acinetobacter baumannii

Vyanka Mezcord, Irene Luu, Usman Akhar, German M. Traglia, Cecilia Rodríguez, Samyar Moheb, Shayra D Sanchez, Maria T Soto, Maria J Cima Clave, Rodrigo Sieira, et al.

mBio, e03760–25

Human serum albumin and biological fluids reduce cefiderocol activity in carbapenem-resistant Gram-negative bacteria

Azadeh Varnado, Samyar Moheb, Shayra D Sanchez, Cecilia Rodriguez, Mase Hamza, Jenny Escalante, Marisel R Tuttobene, German M. Traglia, Fernando Pasteran, Marcelo E Tolmasky, et al.

International Journal of Antimicrobial Agents, 107781

Two Cases of Posttraumatic Kosakonia Infection, Argentina, 2023

Claudia Barberis, Maria Sol Haim, Paula Zomero, German M. Traglia, Alejandro Ellis, Roxana Cittadini, Tomás Poklépovich, Marisa Almuzara, Carlos Vay

Emerging Infectious Diseases, 32(3), 459

Parameterizing modified nucleic acids for molecular simulations in the AMBER MD software environment

Rodrigo Galindo-Murillo, Akansksha Manghrani, Daniel R. Roe, Olivia Love, Pablo D. Dans, Thomas E. Cheatham III, Christina Bergonzo

Living Journal of Computational Molecular Science, 6(1), 4545

Aptamers Meet Structural Bioinformatics, Computational Chemistry and Artificial Intelligence

Gabriela da Rosa, Mauro de Castro, Victor Miguel García Velásquez, Santiago Pintos, Jimena Benedetto, Leandro Grille, Sofia Valla, Luis Miguel Alvarez Sala, Victoria Calzada, Pablo D. Dans

WIREs Computational Molecular Science

Emerging resistance to novel β-lactam β-lactamase inhibitor combinations in Klebsiella pneumoniae bearing KPC variants

Mase Hamza, German M. Traglia, Lucia Maccari, Sonia Gomez, Maria Belen Sanz, Usman Akhtar, Vyanka Mezcord, Jenny Escalante, Alejandra Corso, Cecilia Rodriguez, et al.

Journal of Global Antimicrobial Resistance

First Report in the Americas of S. enterica Var. Enteritidis Carrying bla NDM-1 in a Putatively New Sub-Lineage of IncC2 Plasmids

Nicolás F Cordeiro, Romina Papa-Ezdra, German M. Traglia, Inés Bado, Virginia García-Fulgueiras, María N Cortinas, Leticia Caiata, Mariana López-Vega, Ana Otero, Martín López, et al.

Antibiotics, 14(6), 620

Genomic Insights of Two Acinetobacter Non-Baumannii Strains with Uncommon Mechanisms of Resistance Leading to Cefiderocol Resistance

Usman Akhtar, Samyar Moheb, Carol Davies-Sala, Joshua Gutierrez, Fernando Pasteran, Marisel R Tuttobene, Tomás Subils, Chun Fu Cheng, Quentin Valle, Rajnikant Sharma, et al.

Infection, Genetics and Evolution

Spontaneous Emergence of Cefiderocol Resistance in Klebsiella pneumoniae KPC-163: Genomic and Transcriptomic Insights

Irene Luu, Vyanka Mezcord, Jenny Escalante, German M. Traglia, Marisel R Tuttobene, Cecilia Rodriguez, Chun Fu Cheng, Quentin Valle, Rajnikant Sharma, Marcelo E Tolmasky, et al.

Antibiotics, 14(8), 832

Identificación y sensibilidad antibiótica de aislamientos de Aeromonas spp. en un Hospital Universitario de la ciudad de Buenos Aires

Eduardo Montalvo, Florencia Veiga, Hernán Rodríguez, German M. Traglia, Carlos Vay, Marisa Almuzara

Revista Argentina de Microbiología, 57(2), 105–113

modXNA: A Modular Approach to Parametrization of Modified Nucleic Acids for Use with Amber Force Fields

Olivia Love, Rodrigo Galindo-Murillo, Daniel R. Roe, Pablo D. Dans, Thomas E. Cheatham III, Christina Bergonzo

Journal of Chemical Theory and Computation, 20, 9354-9363

Ramachandran-like Conformational Space for DNA

Gabriela da Rosa, Leandro Grille, Pablo D. Dans

Journal of Chemical Information and Modeling, 64, 8339-8348

Multiscale simulations of DNA from electrons to nucleosomes

John H. Maddocks, Pablo D. Dans, Thomas H. Cheatham III, Sarah Harris, Charlie Laughton, Modesto Orozco, Lois Pollack, Wilma K. Olson

Biophysical Reviews

Multiscale simulations of DNA from electrons to nucleosomes: 22 years of the Ascona B-DNA Consortium

Pablo D. Dans

Biophysical Reviews

Draft genome sequence of Lacticaseibacillus rhamnosus CRL 2244, a strain with strong killing effect on carbapenem-resistant Acinetobacter baumannii

German M. Traglia, Cecilia Rodriguez, Camila Leal, Briea Gasca, Adiba Aziz, Christina Lopez, Maria Lucia Petrelli, Nicholas T Salzameda, Robert A Bonomo, Raúl Raya, et al.

Microbiology Resource Announcements, 13(1), e00892–23

Duplex droplet digital PCR detection of Streptococcus uberis and Streptococcus dysgalactiae, major etiological agents of bovine mastitis

Leticia Diana, German M. Traglia, Virginia Diana, Luis Calvinho, Jimena Laporta, Andrés Iriarte, Rodrigo Puentes

Frontiers in Animal Science, 4, 1336816

Characterization of cefiderocol-resistant spontaneous mutant variants of Klebsiella pneumoniae producing NDM-5 with a single mutation in cirA

Vyanka Mezcord, German M. Traglia, Fernando Pasteran, Jenny Escalante, Christina Lopez, Olivia Wong, Laura Rojas, Steven H Marshall, Marcelo E Tolmasky, Robert A Bonomo, et al.

International journal of antimicrobial agents, 63(5), 107131

Hetero-antagonism of avibactam and sulbactam with cefiderocol in carbapenem-resistant Acinetobacter spp.

Olivia Wong, Vyanka Mezcord, Christina Lopez, German M. Traglia, Fernando Pasteran, Marisel R Tuttobene, Alejandra Corso, Marcelo E Tolmasky, Robert A Bonomo, María Soledad Ramirez

Microbiology Spectrum, 12(10), e00930–24

Genotypic and phenotypic analysis of Salmonella enterica serovar Derby, looking for clues explaining the impairment of egg isolates to cause human disease

German M. Traglia, Laura Betancor, Lucia Yim, Andrés Iriarte, José Alejandro Chabalgoity

Frontiers in Microbiology, 15, 1357881

Dynamic evolution of Achromobacter xylosoxydans in a patient with leukemia receiving antibiotic treatment

German M. Traglia, Nicholas Furtado, Jenny Escalante, Marisa Almuzara, Roxana Marisa Cittadini, Marisel R Tuttobene, Tomás Subils, Carolina Dominguez Maldonado, Veronica Viard, Soledad Estela Gonzalez, et al.

International journal of antimicrobial agents, 64(2), 107218

Carbapenem-resistant Acinetobacter baumannii (CRAB): metabolic adaptation and transcriptional response to human urine (HU)

Jenny Escalante, Mase Hamza, Brent Nishimura, Meghan Melecio, Carol Davies-Sala, Marisel R Tuttobene, Tomás Subils, German M. Traglia, Chloe Pham, Rodrigo Sieira, et al.

Scientific Reports, 14(1), 19145

Phytobacter spp: the emergence of a new genus of healthcare-associated Enterobacterales encoding carbapenemases in Argentina: a case series

Marisa Almuzara, Roxana Cittadini, German M. Traglia, María Sol Haim, Denise De Belder, Carla Alvarez, Zandra de Lourdes Reynal O'Connor, Cecilia Vera Ocampo, Claudia Barberis, Mónica Prieto, et al.

Infection Prevention in Practice, 6(3), 100379

First report of abdominal sepsis caused by a recently described species: Chimaeribacter arupi

Claudia Barberis, German M. Traglia, María Sol Haim, Tomás Poklepovich, Denise De Belder, Rodrigo Arrieta, Carlos Vay, Marisa Almuzara

Diagnostic Microbiology and Infectious Disease, 110(2), 116476

The ruminant telomere-to-telomere (RT2T) consortium

Theodore S Kalbfleisch, Stephanie D McKay, Brenda M Murdoch, David L Adelson, Diego Almansa-Villa, Gabrielle Becker, Linda M Beckett, Maria Jose Benitez-Galeano, Fernando Biase, Theresa Casey, et al.

Nature genetics, 56(8), 1566–1573

Xanthomonas citri pv. eucalyptorum strain 4866-2\_S43 (formerly X. axonopodis pv. eucalyptorum): the causal agent of bacterial leaf blight on eucalypts recovered in Argentina

German M. Traglia, Mousami Poudel, Samuel Miño, Blanca Isabel Canteros, Gerald V Minsavage, Anuj Sharma, Erica M Goss, Jeffrey B Jones, Alberto Gochez

Access Microbiology, 6(10), 000827–v3

Insights into Acinetobacter baumannii AMA205’s unprecedented antibiotic resistance

German M. Traglia, Fernando Pasteran, Samyar Moheb, Usman Akhtar, Sebastian Gonzalez, Carolina Maldonado, Nicholas Furtado, Ahmed Mohamed, Jenny Escalante, Marisel R Tuttobene, et al.

International Journal of Molecular Sciences, 25(21), 11424

An open call for contributions to a special issue of Biophysical Reviews focused on multiscale simulations of DNA from electrons to nucleosomes

Wilma K. Olson, John H. Maddocks, Pablo D. Dans, Thomas H. Cheatham III, Sarah Harris, Charlie Laughton, Modesto Orozco, Lois Pollack

Biophysical Reviews, 15(6), 1901-1902

Histone H3 serine-57 is a CHK1 substrate whose phosphorylation affects DNA repair

N. Parisis, Pablo D. Dans, M. Jbara, B. Singh, D. Schusi-Tiffoche, et al.

Nature Communications, 14(1), 5104

The Pseudo-Torsional Space of RNA

Leandro Grille, Diego Gallego, Leonardo Darré, Gabriela da Rosa, Federica Battistini, Modesto Orozco, Pablo D. Dans

RNA Journal, 29(12), 1896-1909

A fijivirus major viroplasm protein shows RNA-stimulated ATPase activity by adopting pentameric and hexameric assemblies of dimers

Gabriela Llauger, Roberto Melero, Demián Monti, Gabriela Sycz, Cristián Huck-Iriart, María L. Cerutti, Sebastián Klinke, Evelyn Mikkelsen, Ariel Tijman, Rocío Arranz, Victoria Alfonso, Sofía M. Arellano, Fernando A. Goldbaum, Yann G. J. Sterckx, José-María Carazo, Sergio B. Kaufman, Pablo D. Dans, Mariana del Vas, Lisandro H. Otero

mBio, e00023-23

Comparative genome analysis of the genus Shewanella unravels the association of key genetic traits with known and potential pathogenic lineages

Gabriela N Cerbino, German M. Traglia, Teolincacihuatl Ayala Nuñez, Gisela Paula Parmeciano Di Noto, Maria Soledad Ramirez, Daniela Centrón, Andres Iriarte, Cecilia Quiroga

Frontiers in Microbiology, 14, 468

Genomic comparative analysis of two multi-drug resistance (MDR) Acinetobacter baumannii clinical strains assigned to international clonal lineage II recovered pre-and post-COVID-19 pandemic

German M. Traglia, Fernando Pasteran, Jenny Escalante, Brent Nishimura, Marisel R Tuttobene, Tomás Subils, Maria Rosa Nuñez, María Gabriela Rivollier, Alejandra Corso, Marcelo E Tolmasky, et al.

Biology, 12(3), 358

Induced heteroresistance in carbapenem-resistant Acinetobacter baumannii (CRAB) via exposure to human pleural fluid (HPF) and its impact on cefiderocol susceptibility

Vyanka Mezcord, Jenny Escalante, Brent Nishimura, German M. Traglia, Rajnikant Sharma, Quentin Vallé, Marisel R Tuttobene, Tomás Subils, Ingrid Marin, Fernando Pasteran, et al.

International journal of molecular sciences, 24(14), 11752

Role of Xer site-specific recombination in the genesis of pJHCMW1: an evolutionary hypothesis

German M. Traglia, Maria S Ramirez, Marcelo E Tolmasky

Journal of global antimicrobial resistance, 34, 199

MioS, an integrated imaging and modeling strategy to resolve gene folding at basepair resolution

Maria Victoria Neguembor, Diana Buitrago, Rafael Lema, Juan Pablo Arcon, Jürgen Walther, Ximena Garate, Laura Martin, Pablo Romero, Marta Gut, Julie Blanc, Jumana AlHaj Abed, Melike Lakadamyali, Chao-ting Wu, Isabelle Brun Heath, Modesto Orozco, Pablo D. Dans, Maria Pia Cosma

Nature Structural and Molecular Biology, 29(10), 1011-1023

Molecular basis of Arginine and Lysine DNA sequence-dependent thermo-stability modulation

Benjamin Martin, Pablo D. Dans, Milosz Wieczor, Nuria Villegas, Isabelle Brun-Heath, Federica Battistini, Montserrat Terrazas, Modesto Orozco

PLOS Computational Biology

Molecular and phenotypic characterization of a multidrug-resistant Escherichia coli coproducing OXA-232 and MCR-1.1 in Argentina

Javier F Garcia, Marcela Nastro, Laura Dabos, Josefina Campos, German M. Traglia, Cecilia Vera Ocampo, Angela Famiglietti, Carlos H Rodriguez, Carlos A Vay

Microbial Drug Resistance, 28(5), 511–516

Sequence-Dependent Structural Properties of B-DNA: What Have We Learned in 40 Years?

Gabriela da Rosa, Leandro Grille, Victoria Calzada, ABC consortium, Pablo D. Dans

Biophysical Reviews

The Impact of the Hydroxymethylcytosine Epigenetic Signature on DNA Structure and Function

Federica Battistini, Pablo D. Dans, Montserrat Terrazas, Chiara L. Castellazzi, Guillem Portella, Mireia Labrador, Núria Villegas, Isabelle Brun-Heath, Irene Gómez-Pinto, Carlos González, Modesto Orozco

PLOS Computational Biology, 17, e1009547

Impact of DNA methylation on 3D genome structure

Diana Buitrago, Mireia Labrador, Juan Pablo Arcon, Rafael Lema, Oscar Flores, Anna Esteve-Codina, Julie Blanc, Nuria Villegas, David Bellido, Marta Gut, Pablo D. Dans, Simon C. Heath, Ivo Gut, Isabelle Brun Heath, Modesto Orozco

Nature Communications, 12, 3243

Antimicrobial peptides in the seedling transcriptome of the tree legume Peltophorum dubium

Susana Rodríguez-Decuadro, Gabriela da Rosa, Santiago Radío, Mariana Barraco-Vega, Ana Maria Benko-Iseppon, Pablo D. Dans, Pablo Smircich, Gianna Cecchetto

Biochimie

Infecciones por Vagococcus spp. Aspectos microbiológicos y clínicos y revisión de la literatura

Laura Racero, Claudia Barberis, German M. Traglia, María Susana Loza, Carlos Vay, Marisa Almuzara

Enfermedades Infecciosas y Microbiología Clínica, 39(7), 335–339

Salmonella enterica serovars Dublin and Enteritidis comparative proteomics reveals differential expression of proteins involved in stress resistance, virulence, and anaerobic metabolism

AY Martinez-Sanguiné, B D’alessandro, M Langleib, German M. Traglia, A Mónaco, R Durán, JA Chabalgoity, L Betancor, L Yim

Infection and immunity, 89(3), 10–1128

Corynebacterium phoceense--a rare Corynebacterium species isolated from a urine sample

Claudia M Barberis, German M. Traglia, Marisa N Almuzara, Danilo JPG Rocha, Carolina S Santos, Eric RGR Aguiar, Luis GC Pacheco, Carlos A Vay

Access Microbiology, 3(2), 000197

Interplay between meropenem and human serum albumin on expression of carbapenem resistance genes and natural competence in Acinetobacter baumannii

Casin Le, Camila Pimentel, Marisel R Tuttobene, Tomas Subils, Brent Nishimura, German M. Traglia, Federico Perez, Krisztina M Papp-Wallace, Robert A Bonomo, Marcelo E Tolmasky, et al.

Antimicrobial Agents and Chemotherapy, 65(10), 10–1128

Molecular Determinants for Nitric Oxide Regulation of the Murine Cationic Amino Acid Transporter CAT-2A

Ruifang Zheng, Gabriela da Rosa, Pablo D. Dans, R. Daniel Peluffo

Biochemistry

A Multi-Modal Coarse-Grain Model of DNA Flexibility Mappable to the Atomistic Level

Jürgen Walther, Pablo D. Dans, Alexandra Balaceanu, Adam Hospital, Genís Bayarri, Modesto Orozco

Nucleic Acids Research

Diversity of Achromobacter species recovered from patients with cystic fibrosis, in Argentina

Mariana Papalia, Carla Steffanowski, German M. Traglia, Marisa Almuzara, Pablo Martina, Laura Galanternik, Carlos Vay, Gabriel Gutkind, María Soledad Ramírez, Marcela Radice

Revista Argentina De Microbiología, 52(1), 13–18

Distinct mechanisms of dissemination of NDM-1 metallo-β-lactamase in Acinetobacter species in Argentina

Mark D Adams, Fernando Pasteran, German M. Traglia, Jasmine Martinez, Fanny Huang, Christine Liu, Jennifer S Fernandez, Carolina Lopez, Lisandro J Gonzalez, Ezequiel Albornoz, et al.

Antimicrobial agents and chemotherapy, 64(5), 10–1128

Functional analysis of the Acinetobacter baumannii XerC and XerD site-specific recombinases: potential role in dissemination of resistance genes

David L Lin, German M. Traglia, Rachel Baker, David J Sherratt, Maria Soledad Ramirez, Marcelo E Tolmasky

Antibiotics, 9(7), 405

Characterization of ST25 blaNDM-1 producing Acinetobacter spp. strains leading the increase in NDM-1 emergence in Argentina

Deja Rodgers, Fernando Pasteran, Manuel Calderon, Sara Jaber, German M. Traglia, Ezequiel Albornoz, Alejandra Corso, Alejandro J Vila, Robert A Bonomo, Mark D Adams, et al.

Journal of global antimicrobial resistance, 23, 108

Genomic analysis of two Acinetobacter baumannii strains belonging to two different sequence types (ST172 and ST25)

Sabrina Montaña, Elisabet Vilacoba, Jennifer S Fernandez, German M. Traglia, Adriana Sucari, Magdalena Pennini, Andres Iriarte, Daniela Centron, Roberto G Melano, Maria Soledad Ramirez

Journal of Global Antimicrobial Resistance, 23, 154–161

Genomic analysis of two NDM-1 Providencia stuartii strains recovered from a single patient

Amparo Hoard, Sabrina Montaña, Alessandro Moriano, Jennifer S Fernandez, German M. Traglia, Cecilia Quiroga, Agustina Franchi, Emilia Cohen, Cecilia Corigliano, Marisa Almuzara, et al.

Current microbiology, 77(12), 4029–4036

An Acinetobacter non-baumannii population study: antimicrobial resistance genes (ARGs)

Adam Baraka, German M. Traglia, Sabrina Montaña, Marcelo E Tolmasky, Maria Soledad Ramirez

Antibiotics, 10(1), 16

The Static and Dynamic Structural Heterogeneities of B-DNA: Extending Calladine-Dickerson rules

Pablo D. Dans, Alexandra Balaceanu, Marco Pasi, Alessandro S. P. Patelli, Daiva Petkevičiūtė, Jürgen Walther, Adam Hospital, Richard Lavery, John Maddocks, Modesto Orozco

Nucleic Acids Research

Epigenetic Loss of RNA Methyltransferase NSUN5 in Glioma Targets Ribosomes to Drive a Stress Adaptive Translational Program Associated with Long-Term Survival

Maxime Janin, Vanessa Ortiz-Barahona, Manuel Castro de Moura, Anna Martínez-Cardús, Pere Llinàs-Arias, Marta Soler, Daphna Nachmani, Joffrey Pelletier, Ulrike Schumann, et al., Pablo D. Dans, Modesto Orozco, et al., Manel Esteller

Acta Neuropathologica

Gene Isolation of a New Legume Defensin with a Broad Spectrum of Antimicrobial Activity

Susana Rodriguez, Pablo D. Dans, María Alejandra Borba, Ana María Benko-Iseppon, Gianna Cecchetto

Planta

How B-DNA Dynamics Decipher Sequence-selective Protein Recognition

Federica Battistini, Adam Hospital, Diana Buitrago, Pablo D. Dans, Josep Lluis Gelpi, Modesto Orozco

Journal of Molecular Biology

VeriNA3d: An R Package for the Data Mining of Nucleic Acids

Diego Gallego, Leonardo Darré, Pablo D. Dans, Modesto Orozco

Bioinformatics – Application Notes

Modulation of the Helical Properties of DNA: Next-To-Nearest Neighbour Effects and Beyond

Alexandra Balaceanu, Diana Buitrago, Jürgen Walther, Pablo D. Dans, Modesto Orozco

Nucleic Acids Research

An in-depth look at DNA crystals through the prism of molecular dynamics simulations

Antonia Kuzmanic, Pablo D. Dans, Modesto Orozco

CHEM (Cell Press)

Effect of host human products on natural transformation in Acinetobacter baumannii

Brettni Quinn, German M. Traglia, Meaghan Nguyen, Jasmine Martinez, Christine Liu, Jennifer S Fernandez, Maria Soledad Ramirez

Current microbiology, 76(8), 950–953

Interspecies DNA acquisition by a naturally competent Acinetobacter baumannii strain

German M. Traglia, Kori Place, Cristian Dotto, Jennifer S Fernandez, Sabrina Montaña, Camila dos Santos Bahiense, Alfonso Soler-Bistue, Andres Iriarte, Federico Perez, Marcelo E Tolmasky, et al.

International journal of antimicrobial agents, 53(4), 483–490

Genetic and phenotypic features of a novel acinetobacter species, strain A47, isolated from the clinical setting

Sareda TJ Schramm, Kori Place, Sabrina Montaña, Marisa Almuzara, Sammie Fung, Jennifer S Fernandez, Marisel R Tuttobene, Adrián Golic, Matías Altilio, German M. Traglia, et al.

Frontiers in microbiology, 10, 1375

Intra-peritoneal abscess after an abdominal hysterectomy involving Cutibacterium avidum (former Propionibacterium avidum) highly resistant to clindamycin

MC Legaria, C Barberis, J Camporro, German M. Traglia, A Famiglietti, D Stecher, CA Vay

Anaerobe, 59, 176–183

Identification of potential virulence factors in the model strain Acinetobacter baumannii A118

Maria S Ramirez, William F Penwell, German M. Traglia, Daniel L Zimbler, Jennifer A Gaddy, Nikolas Nikolaidis, Brock A Arivett, Mark D Adams, Robert A Bonomo, Luis A Actis, et al.

Frontiers in microbiology, 10, 1599

Discrepancies in susceptibility testing to colistin in Acinetobacter baumannii: The influence of slow growth and heteroresistance

Carlos Hernán Rodriguez, German M. Traglia, Nadya Bastias, Cecilia Pandolfo, Geni Bruni, Marcela Nastro, Ruben Barrios, Eleonora M Bavastro, Mariana Carol Rey, Isabel A Marques, et al.

International journal of antimicrobial agents, 54(5), 587–591

Disruption of hmgA by DNA Duplication is Responsible for Hyperpigmentation in a Vibrio anguillarum Strain

Veronica Batallones, Jennifer Fernandez, Brett Farthing, Jordan Shoemaker, Keizen Li Qian, Kimberly Phan, Eric Fung, Ashley Rivera, Kevin Van, Francesca de la Cruz, et al.

Scientific Reports, 9(1), 14589

Modeling, Simulations, and Bioinformatics at the Service of RNA Structure

Pablo D. Dans, Diego Gallego, Alexandra Balaceanu, Leonardo Darré, Hansel Gómez, Modesto Orozco

CHEM (Cell Press)

Glyceraldehyde 3-phosphate dehydrogenase is a chaperone that allocates labile heme in cells

Elizabeth Sweeny, Anuradha Singh, Ritu Chakravarti, Osiris Martinez-Guzman, Arushi Saini, Mohammad Haque, Greer Garee, Pablo D. Dans, Luciana Hannibal, Amit Reddi, Dennis Stuehr

Journal of Biological Chemistry

Allosterism and Signal Transfer in DNA

Alexandra Balaceanu, Alberto Pérez, Pablo D. Dans, Modesto Orozco

Nucleic Acids Research

Antimicrobial and structural insights of a new snakin-like peptide isolated from Peltophorum dubium (Fabaceae)

Susana Rodríguez-Decuadro, Mariana Barraco-Vega, Pablo D. Dans, Valesca Pandolfi, Ana Maria Benko-Iseppon, Gianna Cecchetto

Amino Acids

Total nephrectomy following Corynebacterium coyleae urinary tract infection

Claudia M Barberis, Eduardo Montalvo, Soledad Imas, German M. Traglia, Marisa N Almuzara, Carlos Hernán Rodriguez, Angela Famiglietti, Octavio Mazzocchi, Carlos Vay

JMM Case Reports, 5(9), e005149

Characterisation of OXA-258 enzymes and AxyABM efflux pump in Achromobacter ruhlandii

Mariana Papalia, German M. Traglia, Melina Ruggiero, Marisa Almuzara, Carlos Vay, Gabriel Gutkind, María Soledad Ramírez, Marcela Radice

Journal of Global Antimicrobial Resistance, 14, 233–237

Whole-genome analysis of an extensively drug-resistance Empedobacter falsenii strain reveals distinct features and the presence of a novel metallo-ß-lactamase (EBR-2)

Chelsea Collins, Marisa Almuzara, Mariana Saigo, Sabrina Montaña, Kevin Chiem, German M. Traglia, Maria Alejandra Mussi, Marcelo Tolmasky, Andres Iriarte, Carlos Vay, et al.

Current microbiology, 75(8), 1084–1089

Clinical cases of VIM-producing Pseudomonas mendocina from two burned patients

Marisa Almuzara, Sabrina Daiana Montaña, Mariana Estela Carulla, Gabriela Sly, Jennifer Fernandez, Marlene Hernandez, Alessandro Moriano, German M. Traglia, Romina Vanesa Bakai, Maria Soledad Ramirez

Human serum albumin alters specific genes that can play a role in survival and persistence in Acinetobacter baumannii

Brettni Quinn, Nyah Rodman, Eugenio Jara, Jennifer S Fernandez, Jasmine Martinez, German M. Traglia, Sabrina Montaña, Virginia Cantera, Kori Place, Robert A Bonomo, et al.

Scientific Reports, 8(1), 14741

Genome sequence analysis of an extensively drug-resistant Acinetobacter baumannii indigo-pigmented strain depicts evidence of increase genome plasticity

German M. Traglia, Kevin Chiem, Brettni Quinn, Jennifer S Fernandez, Sabrina Montaña, Marisa Almuzara, María Alejandra Mussi, Marcelo E Tolmasky, Andres Iriarte, Daniela Centrón, et al.

Scientific Reports, 8(1), 16961

How accurate are accurate force-fields for B-DNA?

Pablo D. Dans, Ivan Ivani, Adam Hospital, Guillem Portella, Carlos González, Modesto Orozco

Nucleic Acids Research, 45(7), 4217-4230

Molecular Modeling of Nucleic Acids — in Computational Tools for Chemical Biology

Hansel Gómez, Jürgen Walther, Leonardo Darré, Ivan Ivani, Pablo D. Dans, Modesto Orozco

Royal Society of Chemistry (book chapter)

Genetic analysis of a PER-2-producing Shewanella sp. strain harbouring a variety of mobile genetic elements and antibiotic resistance determinants

Marisa Almuzara, Sabrina Montaña, Terese Lazzaro, Sylvia Uong, Gisela Parmeciano Di Noto, German M. Traglia, Romina Bakai, Daniela Centrón, Andrés Iriarte, Cecilia Quiroga, et al.

Journal of global antimicrobial resistance, 11, 81–86

The role of unconventional hydrogen bonds in determining BII propensities in B-DNA

Alexandra Balaceanu, Marco Pasi, Pablo D. Dans, Adam Hospital, Richard Lavery, Modesto Orozco

Journal of Physical Chemistry Letters, 8(1), 21-28

Small Details Matter: the Importance of the 2'-Hydroxyl in RNA

Leonardo Darré, Ivan Ivani, Pablo D. Dans, Hansel Gómez, Adam Hospital, Modesto Orozco

Journal of the American Chemical Society, 138(50), 16355-16363

Long-timescale dynamics of the Drew-Dickerson dodecamer

Pablo D. Dans, L. Danilāne, Ivan Ivani, Tomáš Dršata, Filip Lankaš, Adam Hospital, Jürgen Walther, Ricard Illa Pujagut, Federica Battistini, Josep Lluis Gelpí, Richard Lavery, Modesto Orozco

Nucleic Acids Research, 44(9), 4052-4066

Saturation of recognition elements blocks evolution of new tRNA identities

A. Saint-Léger, C. Bello-Cabrera, Pablo D. Dans, A. G. Torres, E. M. Novoa, N. Camacho, M. Orozco, F. A. Kondrashov, L. Ribas de Pouplana

Science Advances, 2(4), e1501860

BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data

Adam Hospital, Pau Andrio, Cesare Cugnasco, Laia Codó, Yolanda Becerra, Pablo D. Dans, Federica Battistini, Jordi Torres, Ramon Goni, Modesto Orozco, et al.

Nucleic Acids Research, 44(D1), D272-8

Multiscale simulation of DNA

Pablo D. Dans, Jürgen Walther, Hansel Gómez, Modesto Orozco

Current Opinion in Structural Biology, 37, 29-45

Parmbsc1: a refined force field for DNA simulations

Ivan Ivani, Pablo D. Dans, Agnes Noy, Alberto Pérez, Ignacio Faustino, Adam Hospital, Jürgen Walther, Pau Andrio, Ramon Goni, Alexandra Balaceanu, et al.

Nature Methods, 13(1), 55-58

Widespread dispersion of the resistance element tet (B):: ISCR2 in XDR Acinetobacter baumannii isolates

Elisabet Vilacoba, Marisa Almuzara, Lucía Gulone, German M. Traglia, S Montana, H Rodriguez, Fernando Pasteran, M Pennini, A Sucari, N Gómez, et al.

Epidemiology & Infection, 144(7), 1574–1578

The genetic analysis of an Acinetobacter johnsonii clinical strain evidenced the presence of horizontal genetic transfer

Sabrina Montaña, Sareda TJ Schramm, German M. Traglia, Kevin Chiem, Gisela Parmeciano Di Noto, Marisa Almuzara, Claudia Barberis, Carlos Vay, Cecilia Quiroga, Marcelo E Tolmasky, et al.

PLoS One, 11(8), e0161528

Serum albumin and Ca2+ are natural competence inducers in the human pathogen Acinetobacter baumannii

German M. Traglia, Brettni Quinn, Sareda TJ Schramm, Alfonso Soler-Bistue, Maria Soledad Ramirez

Antimicrobial Agents and Chemotherapy, 60(8), 4920–4929

Whole-genome comparative analysis of two carbapenem-resistant ST-258 Klebsiella pneumoniae strains isolated during a north-eastern Ohio outbreak: differences within the high heterogeneity zones

María Soledad Ramirez, Gang Xie, German M. Traglia, Shannon L Johnson, Karen W Davenport, David Van Duin, Azam Ramazani, Federico Perez, Michael R Jacobs, David J Sherratt, et al.

Connecting proline and γ-aminobutyric acid in stressed plants through non-enzymatic reactions

Santiago Signorelli, Pablo D. Dans, E. Laura Coitiño, Omar Borsani, Jorge Monza

PLoS One, 10(3), e0115349

The structural impact of DNA mismatches

Giulia Rossetti, Pablo D. Dans, Irene Gómez-Pinto, Ivan Ivani, Carlos González, Modesto Orozco

Nucleic Acids Research, 43(8), 4309-4321

Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry for species identification of nonfermenting Gram-negative bacilli

Marisa Almuzara, Claudia Barberis, German M. Traglia, Angela Famiglietti, Maria Soledad Ramirez, Carlos Vay

Journal of microbiological methods, 112, 24–27

Genetic variability of AdeRS two-component system associated with tigecycline resistance in XDR-Acinetobacter baumannii isolates

S Montana, Elisabet Vilacoba, German M. Traglia, Marisa Almuzara, M Pennini, A Fernández, A Sucari, Daniela Centron, Maria Soledad Ramirez

Current microbiology, 71(1), 76–82

Draft genome sequence of Empedobacter (formerly Wautersiella) falsenii comb. nov. Wf282, a strain isolated from a cervical neck abscess

German M. Traglia, Chelsea Dixon, Kevin Chiem, Marisa Almuzara, Claudia Barberis, Sabrina Montaña, Cindy Merino, María Alejandra Mussi, Marcelo E Tolmasky, Andres Iriarte, et al.

Genome Announcements, 3(2), 10–1128

A taxonomically unique Acinetobacter strain with proteolytic and hemolytic activities recovered from a patient with a soft tissue injury

Marisa Almuzara, German M. Traglia, Lenka Krizova, Claudia Barberis, Sabrina Montaña, Romina Bakai, Alicia Tuduri, Carlos Vay, Alexandr Nemec, María Soledad Ramírez

Journal of Clinical Microbiology, 53(1), 349–351

Isolation of Bordetella species from unusual infection sites

Marisa Almuzara, Claudia Barberis, German M. Traglia, Gabriela Sly, Adriana Procopio, Viviana Vilches, Maria Soledad Ramirez, Angela Famiglietti, Carlos Vay

JMM Case Reports, 2(2), e000029

Draft genome sequence of a taxonomically unique acinetobacter clinical strain with proteolytic and hemolytic activities

German M. Traglia, Marisa Almuzara, Claudia Barberis, Sabrina Montaña, Sareda TJ Schramm, Brandi Enriquez, María Alejandra Mussi, Carlos Vay, Andres Iriarte, María Soledad Ramírez

Genome Announcements, 3(2), 10–1128

White and blue light induce reduction in susceptibility to minocycline and tigecycline in Acinetobacter spp. and other bacteria of clinical importance

María Soledad Ramírez, German M. Traglia, Jorgelina Fernanda Pérez, Gabriela Leticia Müller, María Florencia Martínez, Adrián Ezequiel Golic, María Alejandra Mussi

Journal of medical microbiology, 64(5), 525–537

Direct measurement of the dielectric polarization properties of DNA

Ana Cuervo, Pablo D. Dans, José L. Carrascosa, Modesto Orozco, Gabriel Gomila, Laura Fumagalli

Proceedings of the National Academy of Sciences USA, 111(35), E3624-30

Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA

Pablo D. Dans, Ignacio Faustino, Federica Battistini, Krystyna Zakrzewska, Richard Lavery, Modesto Orozco

Nucleic Acids Research, 42(19), 11304-11320

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

Marco Pasi, John H. Maddocks, David Beveridge, Thomas C. Bishop, David A. Case, Thomas Cheatham, Pablo D. Dans, B. Jayaram, Filip Lankaš, Charles Laughton, et al.

Nucleic Acids Research, 42(19), 12272-12283

Plasmid-mediated antibiotic resistance and virulence in gram-negatives: the Klebsiella pneumoniae paradigm

Maria S Ramirez, German M. Traglia, David L Lin, Tung Tran, Marcelo E Tolmasky

Microbiology spectrum, 2(5), 10–1128

Presence of OXA-type enzymes in Achromobacter insuavis and A. dolens

German M. Traglia, Mariana Papalia, Marisa Almuzara, Gabriel Gutkind, Daniela Centrón, Carlos Vay, Marcela Radice, María Soledad Ramírez

Current microbiology, 69(4), 501–506

Whole-genome sequence analysis of the naturally competent Acinetobacter baumannii clinical isolate A118

German M. Traglia, Katherina Chua, Daniela Centron, Marcelo E Tolmasky, María Soledad Ramírez

Genome biology and evolution, 6(9), 2235–2239

Bacteremia caused by an Acinetobacter junii strain harboring class 1 integron and diverse DNA mobile elements

German M. Traglia, Marisa Almuzara, Elisabet Vilacoba, Alicia Tuduri, Gabriela Neumann, Elida Carmen Pallone, Daniela Centrón, María Soledad Ramírez

Draft genome sequence of an extensively drug-resistant Acinetobacter baumannii indigo-pigmented strain

German M. Traglia, Elisabet Vilacoba, Marisa Almuzara, Leticia Diana, Andres Iriarte, Daniela Centrón, María Soledad Ramírez

Genome announcements, 2(6), 10–1128

Draft genome sequence of an international clonal lineage 1 Acinetobacter baumannii strain from Argentina

Elisabet Vilacoba, Maxime Déraspe, German M. Traglia, Paul H Roy, María Soledad Ramírez, Daniela Centrón

Genome announcements, 2(6), 10–1128

Assessing the Accuracy of the SIRAH Force Field to Model DNA at Coarse Grain Level

Pablo D. Dans, Leonardo Darré, Matias R. Machado, Ari Zeida, Astrid F. Brandner, Sergio Pantano

Advances in Bioinformatics and Computational Biology (book chapter), 71-81

Emergence and spread of plasmid-borne tet (B):: IS CR2 in minocycline-resistant Acinetobacter baumannii isolates

Elisabet Vilacoba, Marisa Almuzara, Lucia Gulone, German M. Traglia, Silvia A Figueroa, Gabriela Sly, Analia Fernández, Daniela Centrón, María Soledad Ramírez

Antimicrobial agents and chemotherapy, 57(1), 651–654

OXA-258 from Achromobacter ruhlandii: a species-specific marker

Mariana Papalia, Marisa Almuzara, Daniela Cejas, German M. Traglia, Maria Soledad Ramírez, Laura Galanternik, Carlos Vay, Gabriel Gutkind, Marcela Radice

Journal of clinical microbiology, 51(5), 1602–1605

Intra-abdominal infections due to Comamonas kerstersii

Marisa N Almuzara, Rosana Cittadini, Cecilia Vera Ocampo, Romina Bakai, German M. Traglia, Maria S Ramirez, Marcelo Del Castillo, Carlos A Vay

Journal of clinical microbiology, 51(6), 1998–2000

Distribution of allelic variants of the chromosomal gene bla OXA-114-like in Achromobacter xylosoxidans clinical isolates

German M. Traglia, Marisa Almuzara, Andrea Karina Merkier, Mariana Papalia, Laura Galanternik, Marcela Radice, Carlos Vay, Daniela Centrón, María Soledad Ramírez

Current microbiology, 67(5), 596–600

Colonization of the mouse upper gastrointestinal tract by Lactobacillus murinus: a histological, immunocytochemical, and ultrastructural study

Marta Almirón, German M. Traglia, Andrea Rubio, Norberto Sanjuan

Current microbiology, 67(4), 395–398

Draft genome sequences of Helicobacter pylori strains HPARG63 and HPARG8G, cultured from patients with chronic gastritis and gastric ulcer disease

Rita Inés Armitano, Gerardo Zerbetto De Palma, Mario José Matteo, Santiago Revale, Soledad Romero, German M. Traglia, Mariana Catalano

Genome announcements, 1(5), 10–1128

Breathing, bubbling, and bending: DNA flexibility from multi-microsecond simulations

Ari Zeida, Matías Rodrigo Machado, Pablo D. Dans, Sergio Pantano

Physical Review E, 86(2), 021903

Exploring polymorphisms in B-DNA helical conformations

Pablo D. Dans, Alberto Pérez, Ignacio Faustino, Richard Lavery, Modesto Orozco

Nucleic Acids Research, 40(21), 10668-10678

Achromobacter xylosoxidans: an emerging pathogen carrying different elements involved in horizontal genetic transfer

German M. Traglia, Marisa Almuzara, Andrea Karina Merkier, Christina Adams, Laura Galanternik, Carlos Vay, Daniela Centrón, María Soledad Ramírez

Current microbiology, 65(6), 673–678

Isolation of Kerstersia gyiorum from a patient with cholesteatomatous chronic otitis media

Marisa N Almuzara, Claudia M Barberis, German M. Traglia, Andrea Martinez Ordoñez, Angela MR Famiglietti, Maria S Ramirez, Carlos A Vay

Journal of clinical microbiology, 50(11), 3809–3811

Internalization of locked nucleic acids/DNA hybrid oligomers into Escherichia coli

German M. Traglia, Carol Davies Sala, Juan I Fuxman Bass, Alfonso JC Soler-Bistué, Angeles Zorreguieta, María Soledad Ramírez, Marcelo E Tolmasky

BioResearch open access, 1(5), biores–2012

A hybrid all-atom/coarse grain model for multiscale simulations of DNA

Matías Rodrigo Machado, Pablo D. Dans, Sergio Pantano

Physical Chemistry Chemical Physics, 13(40), 18134-18144

Switching reversibility to irreversibility in glycogen synthase kinase 3 inhibitors: clues for specific design of new compounds

Daniel I. Perez, Valle Palomo, Concepción Pérez, Carmen Gil, Pablo D. Dans, F. Javier Luque, Santiago Conde, Ana Martínez

Journal of Medicinal Chemistry, 54(12), 4042-4056

Another Coarse Grain Model for Aqueous Solvation: WAT FOUR?

Leonardo Darré, Matias R. Machado, Pablo D. Dans, Fernando E. Herrera, Sergio Pantano

Journal of Chemical Theory and Computation, 6(12), 3793-3807

A coarse grained model for atomic-detailed DNA simulations with explicit electrostatics

Pablo D. Dans, Ari Zeida, Matías R. Machado, Sergio Pantano

Journal of Chemical Theory and Computation, 6(5), 1711-1725

Isoform-specific determinants in the HP1 binding to histone 3: insights from molecular simulations

Matias R. Machado, Pablo D. Dans, Sergio Pantano

Amino Acids, 38(5), 1571-1581

Subcellular localization of the interaction between the human immunodeficiency virus transactivator Tat and the nucleosome assembly protein 1

Alex De Marco, Pablo D. Dans, Anna Knezevich, Paolo Maiuri, Sergio Pantano, Alessandro Marcello

Amino Acids, 38(5), 1583-1593

Density functional theory characterization and descriptive analysis of cisplatin and related compounds

Pablo D. Dans, E. Laura Coitiño

Journal of Chemical Information and Modeling, 49(6), 1407-1419

Structural and Energetic Study of Cisplatin and Derivatives: Comparison of the Performance of Density Functional Theory Implementations

Pablo D. Dans, Alejandro Crespo, Darío A. Estrin, E. Laura Coitiño

Journal of Chemical Theory and Computation, 4(5), 740-750