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ABC 2023

Ascona B-DNA Consortium · International workshop

The ABC 2023 conference is a venue to discuss subjects surrounding the sequence-dependent physical properties of DNA, new methods and new models, with a multiscale perspective. From the shorter atomistic scale to more biologically pertinent length scales (mesoscale), i.e. from electrons to nucleosomes.

Top international researchers, ABC members, and collaborators from diverse fields — experimentalists, computational chemists/physicists, and developers of new methods — converge to discuss:

  • All-atom force field development for nucleic acids
  • Sequence-dependent mechanical properties of DNA
  • Coarse-grained models of nucleic acids
  • Multiscale simulations of nucleic acids
  • Protein–DNA interactions
  • DNA–solvent interactions
  • Nucleosome structure and chromatin fibers
  • Nucleosome positioning
  • Epigenetic modifications: DNA and histone tails

ABC history

Founded in 2001 during the "Atomistic to Continuum Models for Long Molecules" meeting in Ascona, Switzerland, the Ascona B-DNA Consortium (ABC) brings together molecular-dynamics groups dedicated to setting standards for DNA simulation. Its first two systematic phases (2004–2009) ran 15-ns simulations of ten 15-mer sequences with the parm94 force field and then, with parmbsc0, delivered the first comprehensive study of all 136 unique tetranucleotide combinations.

Over the following decade the consortium pushed timescales into the microsecond range with μABC (2010–2014), driving the development of the parmbsc1 force field, and the miniABC project on 13 sequences refined Calladine–Dickerson rules under varied salt conditions. The current effort, HexABC, brings together 14 institutions to characterise all 2080 unique hexanucleotides over sub-millisecond timescales.

DansLab has been a member of the ABC since 2014, co-organised the latest meeting (Ascona 2023), and is co-organising the next one in Barcelona in 2027.

Scientific & organizing committees

Scientific

John Maddocks

John Maddocks

EPFL Lausanne CH

  • Wilma OlsonUS
  • Sarah HarrisUK
  • Modesto OrozcoSP
  • Tom CheathamUS
  • Lois PollackUS
  • Charles LaughtonUK

Organizing

Pablo D. Dans

Pablo D. Dans

UdelaR Salto UY

  • Agnes NoyUK
  • Alberto PérezUS
  • Daiva PetkeviciuteLT
  • Rodrigo Galindo-MurilloUS
  • Marco PasiFR
  • Rosana CollepardoUK
  • Federica BattistiniSP

Poster session winners

  • Kazi Amirul Hossain

    Role of Acidic Amino Acid Residues in Sequence-specific DNA-protein Interactions

    Kazi Amirul Hossain

    Gdańsk University of Technology

  • Victoria E. Hill

    DNA damage competes with sequence to pin a plectoneme

    Victoria E. Hill

    Department of Chemistry, The University of Sheffield

  • Maria Julia Maristany

    Mechanistic properties of DNA govern nucleosome unwrapping

    Maria Julia Maristany

    Department of Physics, University of Cambridge

Book of Abstracts

Timetable, participants, scientific program and book of abstracts.

Open the PDF →

Pictures

John Maddocks at ABC 2023 (1)
John Maddocks at ABC 2023 (2)
ABC 2023 conference moment (1)
ABC 2023 conference moment (2)
ABC 2023 conference moment (3)

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